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DNA MICROARRAY Introduction • As we know that for molecular characterisation of any gene/genome, nucleotide sequences are required. Understanding the genome function by analysing the genes and the ways the genes expressed by the genome have a key importance. There is a branch of biology called transcriptomics, which deals with gene expression in a tissue. It helps in studying the expression of genes by a genome both qualitatively- by identifying which genes are expressed and which are not expressed and qualitatively- by measuring varying levels of expression for different genes. So, transcriptome analysis reveals gene expression profiles that for the same genome may vary from cell to cell or from tissue type to tissue type. Identifying genes expressed by a genome is essential for understanding how the genome functions. Gene expression can be checked by Northern blotting technique. But to check multiple gene expression simultaneously, we developed a technique called DNA Microarray. What is DNA microarray DNA microarray, also known as gene chip is a solid support (like a glass slide) onto which single stranded DNA molecules are attached. Each spot of DNA on glass slide called probe which represents a single gene. It is widely used because it enables researchers to analyze all of a sample’s expressed genes simultaneously. Microarray technology evolved from Southern blotting whereby fragmented DNA is attached to a substrate and then probed with a known gene. Principle It involves hybridisation of nucleotide sequences. Probe is complementary to target gene. Hybridisation produces signal. Requirements for cDNA based Microarray Glass slide Probe (Attached to glass slide) Fluorescent dye Scanner Reverse transcriptase enzyme
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